PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.043580.1
Common NameCsa_6G505920, LOC101222613
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 337aa    MW: 37375.5 Da    PI: 6.5263
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.043580.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.91e-0963110354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       +  rE+ RRdr+N+ f eL   l ++     +K++Ka+iL+ +++ +k+L
  Cucsa.043580.1  63 IQKADREKLRRDRLNEHFLELGNTLDPD----RPKNDKATILTDTIQMLKDL 110
                     56789********************997....79****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.98260110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.12E-761114No hitNo description
SuperFamilySSF474593.27E-1361130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-1262133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-763110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-766116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MEQWKTGDFS QSVVPAELVP SSSLQPQPQS LAVSSTRHLS NQLTESRLRT DAEVKDPIAV  60
RKIQKADREK LRRDRLNEHF LELGNTLDPD RPKNDKATIL TDTIQMLKDL TAEVNRLKAD  120
YEALSEESRE LTQEKNELRE EKASLKSDIE NLNAQYQQRL RVMFPWATMD PSVVMGPPYS  180
YPVPVPVPPG PIPMHPSLQP FTFFGNQNPG AIPNPCSTFV PYTAAANHPM DQPSAQYASN  240
SHISSKQDSR SKSSDQHRRS NVERCDESTD VATDLELKMP GSSTMQDASS GSKKGKQSQR  300
KEKSATDCSS SSRFSSSQVL QDSSSNSVGD IPKQNN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011658044.10.0PREDICTED: transcription factor bHLH121
SwissprotQ9LT239e-86BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A0A0KGN60.0A0A0A0KGN6_CUCSA; Uncharacterized protein
STRINGVIT_04s0023g03430.t011e-146(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22823376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.12e-71bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]